| Occurrences: |
view occurrences
| id |
a9307bdf-09e0-467f-b760-795d0e47e31b
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-11
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1180.0
|
| id |
56580776-2c68-432e-bff1-fff651700074
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-20
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
| id |
0070a7d3-cdea-4eeb-b915-84a669e7eef6
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-07
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
98848676-558e-4cdf-89b2-e25ebd374e94
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-06
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
d74c4230-6bf0-47f5-b57c-84c3a822164c
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-16
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
d95ce1a3-2d3a-4d5f-b921-d7ebab2b2e19
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-03
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|