| Occurrences: |
view occurrences
| id |
391041e6-f3ff-4bde-9aa9-20de60b52563
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S70
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
15.0
|
| id |
f00ab60b-1ddd-4e5f-be13-a976c5e5c517
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S76
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
10.0
|
| id |
0121b8a8-1297-470f-8003-340736abec05
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S73
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|