PacMAN decision support system

Potential detection of Ciona savignyi in Fiji

Description:

Potential detection of Ciona savignyi with confidence medium on 2022-11-23 in material sample S88, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ciona savignyi
Chordata > Ascidiacea > Phlebobranchia > Cionidae
WoRMS: 250292

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

1824.0

Names:

1

Occurrences:

view occurrences

id	c4d25449-7801-4229-a5df-9d853397eea2
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S88
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1824.0

id	694173f5-dd69-430b-abee-cb4ffb9083b2
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S76
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	15.0

id	bb95d7e5-f2ce-4ff5-95cc-d2ad0c597f8e
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S70
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	468ae128-4be3-4563-89bd-297f35d41470
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S71
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	05f6c0e8-7671-4156-9d5d-b3b254f13423
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S73
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	399318a5-af17-4d57-ad55-863cdc2f78e0
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S72
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	9b89f3a5-aa6c-46c3-a613-d1f0a051de5f
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S84
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Ciona savignyi in Fiji

Status

Ciona savignyi does not have an offial status in Fiji.

Notes

No notes found.