Occurrences: |
view occurrences
id |
3719ea74-c70f-4a72-bbbb-b0e99b5cfcaf
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S88
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
19.0
|
id |
ef214cd4-2472-49f2-96c7-78b061438363
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S88
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
17.0
|
id |
e6e6eecb-8db3-4415-8074-af4fa948614f
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S76
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
10.0
|
id |
41ae43a7-22bb-4648-b4e3-2a095079e70c
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S76
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
3.0
|
id |
5a7d6357-f470-4cbd-909a-f0d731de1319
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S70
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
a2fe565e-f873-4213-92bd-0defd40e8ef0
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S76
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
b5059ab3-bfe4-4df6-bd17-86f7641aacd3
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S70
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
3.0
|
id |
5f295157-7cdf-43f4-8f05-8846b75956bc
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S70
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
07bf6bfb-e2bb-48be-808d-96e9e8ea7825
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S70
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACACGGAGGGGCGGACGGCCGCACTGGTCGCGCTCGTCCCTCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
b620c445-335b-43ba-87a9-be4c9ddc6c73
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S73
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
|