| Occurrences: |
view occurrences
| id |
5d22c107-e4de-428e-96d8-e2173af214fa
|
| scientificName |
Palaemonella rotumana
|
| AphiaID |
107619
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| eventID |
SUVA1_20230824_PC
|
| materialSampleID |
USP-24-01-141
|
| target_gene |
COI
|
| DNA_sequence |
TCTAGCTGGTGTTATTGCTCATGCGGGGCCTGCTGTAGATTTAGGTATTTTTTCTTTACACTTAGCTGGGGTTTCTTCTATTCTAGGAGCAGTTAATTTCATTACAACTGTAATGAACATGCGGCCTAAAGGAATAACTATAGACCGAATACCTCTATTTGTTTGAGCTGTATTTTTAACTGCAATTCTGCTTTTGCTTTCCTTGCCTGTCTTAGCCGGTGCTATTACAATACTTTTAACTGATCGTAATTTAAATACTTCATTCTTTGATCCAGCAGGAGGGGGAGATCCAATTCTTTATCAACATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ539754",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ559938",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ560073",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ560227",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ560328",
"identity": 0.99,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
2571.0
|
| id |
12f62022-10ba-4627-a275-1865dbf11414
|
| scientificName |
Palaemonella rotumana
|
| AphiaID |
107619
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| eventID |
SUVA2_20230824_PA
|
| materialSampleID |
USP-24-01-142
|
| target_gene |
COI
|
| DNA_sequence |
TCTAGCTGGTGTTATTGCTCATGCGGGGCCTGCTGTAGATTTAGGTATTTTTTCTTTACACTTAGCTGGGGTTTCTTCTATTCTAGGAGCAGTTAATTTCATTACAACTGTAATGAACATGCGGCCTAAAGGAATAACTATAGACCGAATACCTCTATTTGTTTGAGCTGTATTTTTAACTGCAATTCTGCTTTTGCTTTCCTTGCCTGTCTTAGCCGGTGCTATTACAATACTTTTAACTGATCGTAATTTAAATACTTCATTCTTTGATCCAGCAGGAGGGGGAGATCCAATTCTTTATCAACATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ539754",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ559938",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ560073",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ560227",
"identity": 0.99,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Palaemonella rotumana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:107619",
"accession": "MZ560328",
"identity": 0.99,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
5.0
|
|