| Occurrences: |
view occurrences
| id |
203c4ee9-bbac-4af5-bfb7-4bc543da11d4
|
| scientificName |
Xylophaga
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S77
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
27.0
|
| id |
a33d629d-f6cf-45bc-873f-21c2786e7a99
|
| scientificName |
Xylophaga
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S74
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
12.0
|
| id |
ccc904d7-398a-4621-9fff-21b3355c9181
|
| scientificName |
Xylophaga
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S78
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
8.0
|
|