PacMAN decision support system

Potential detection of Boccardia proboscidea in Fiji

Description:

Potential detection of Boccardia proboscidea with confidence medium on 2022-11-23 in material sample S72, marker 18S

Confidence:

medium

Risk:

medium view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Boccardia proboscidea
Annelida > Polychaeta > Spionida > Spionidae
WoRMS: 327249

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.995

Reads:

245.0

Names:

Occurrences:

view occurrences

id	2f5668d2-f4d0-42d4-8a5f-33ea714a1e7a
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S72
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGGCGGTCCGGCGGTCCTCCTCGCGGAGGTATACTGCCGCGACTGCTCTCACCTCACCGGCTCTCCCCGGGTGCTCTTCGCTGAGTGCCCGAGGCGGCCGGAATGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.94 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546257.1.1763_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	245.0

id	f0c515b3-ba73-46d2-91cb-2939d3002e6d
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S72
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	8.0

id	9a506f4a-297c-41bb-b23b-58960dfcbec8
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S70
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	3b9712e9-2af7-4fb1-b600-e79cc486ab41
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S72
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGGCCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	242.0

Boccardia proboscidea in Fiji

Status

Boccardia proboscidea does not have an offial status in Fiji.

Notes

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