| Occurrences: |
view occurrences
| id |
30f72d7d-7ae9-4109-9f32-d4c6670716ee
|
| scientificName |
Diplosoma
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S88
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
118.0
|
| id |
d30e163f-6861-4743-bb2f-27a520e75d54
|
| scientificName |
Diplosoma
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S73
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
f19cb46d-62fd-4116-9eab-1277ba8b9c70
|
| scientificName |
Diplosoma
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S70
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
6fb645de-3539-459e-b744-e1e576d10c9f
|
| scientificName |
Diplosoma
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S71
|
| target_gene |
18S
|
| DNA_sequence |
GGCCCCGAGATTTATTGCGCGGCAATGATTGAGAGGGACGGACGGGGGCATTCGTACTGCGCCGGGAGAGGTGAAATTCGCGGATCGGCGCAAGACGAACCGAAGCGAAGGCGTCTGCCAAGGACGTTTTCCTTGATCAAGAGCGAGAGTCGGAGGCTCC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Diplosoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103457",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211103.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250415",
"accession": "AB211106.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211107.1.2075_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_ooru",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:266061",
"accession": "AB211098.1.2081_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Diplosoma_simileguwa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389764",
"accession": "AB211108.1.2075_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|