Occurrences: |
view occurrences
id |
4c1a68ab-3dfd-40d7-a75f-35888a0e6a65
|
scientificName |
Celleporina caliciformis
|
AphiaID |
221538
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S76
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
3.0
|
id |
79a35e74-019d-4926-b2ec-e39fc2975976
|
scientificName |
Celleporina caliciformis
|
AphiaID |
221538
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S88
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
|