| Occurrences: |
view occurrences
| id |
57d63c7e-6154-4f53-94b5-091f9d5c6bd8
|
| scientificName |
Hydroides
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S80
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
97.0
|
| id |
5101ae4d-ab47-46f8-9265-6b5cd47d9685
|
| scientificName |
Hydroides
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S81
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
57.0
|
|