| Occurrences: |
view occurrences
| id |
52b8a1d5-6221-450d-afde-cb55009d1bfc
|
| scientificName |
Barnea candida
|
| AphiaID |
140767
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S73
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGCCTCGCGGCGGTCACTGCTCGTCCTCGCCTCCTACGGCCGGTACACACACCGTCCCTTGGTGCTCTTGACCGAGTGTCTCGGGCGGCCGGCACGTTTACTTTGAAGAAATTGGAGTGCT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Barnea truncata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156750",
"accession": "JF899206.1.1783_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "AM774541.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea parva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140768",
"accession": "AM774542.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "KC429405.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
19.0
|
| id |
fcb68586-cb39-45f7-a8ff-b893c66c4941
|
| scientificName |
Barnea candida
|
| AphiaID |
140767
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S76
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGCCTCGCGGCGGTCACTGCTCGTCCTCGCCTCCTACGGCCGGTACACACACCGTCCCTTGGTGCTCTTGACCGAGTGTCTCGGGCGGCCGGCACGTTTACTTTGAAGAAATTGGAGTGCT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Barnea truncata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156750",
"accession": "JF899206.1.1783_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "AM774541.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea parva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140768",
"accession": "AM774542.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "KC429405.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
9b6ac651-2273-4e58-a79c-b7c188dbfd0a
|
| scientificName |
Barnea candida
|
| AphiaID |
140767
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S88
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGCCTCGCGGCGGTCACTGCTCGTCCTCGCCTCCTACGGCCGGTACACACACCGTCCCTTGGTGCTCTTGACCGAGTGTCTCGGGCGGCCGGCACGTTTACTTTGAAGAAATTGGAGTGCT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Barnea truncata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156750",
"accession": "JF899206.1.1783_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "AM774541.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea parva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140768",
"accession": "AM774542.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "KC429405.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
a0cbccb0-a1f0-4fff-a48a-d9be4e386f52
|
| scientificName |
Barnea candida
|
| AphiaID |
140767
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S72
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGCCTCGCGGCGGTCACTGCTCGTCCTCGCCTCCTACGGCCGGTACACACACCGTCCCTTGGTGCTCTTGACCGAGTGTCTCGGGCGGCCGGCACGTTTACTTTGAAGAAATTGGAGTGCT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Barnea truncata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156750",
"accession": "JF899206.1.1783_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "AM774541.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea parva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140768",
"accession": "AM774542.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Barnea candida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140767",
"accession": "KC429405.1.1817_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|