| Occurrences: |
view occurrences
| id |
7f169541-1eac-4a57-bac4-859e28a210f5
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S173
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
9.0
|
| id |
f93aded8-8214-4314-9a22-435a7d339cbd
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S173
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.994,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
45.0
|
| id |
96b4cd50-1cc6-4081-899b-ea468265c864
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S178
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.994,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
|