| Occurrences: |
view occurrences
| id |
f7ed0d6d-a586-4440-b533-9ecb36addcef
|
| scientificName |
Aplysia parvula
|
| AphiaID |
138757
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGGTGCAGGCGGGCGGTCCGGCTCGCGCCGGTTCCACTGCCCGTATCTCCTGCCCTACCGTCTGCCGGCTCTCTCCCGTGGGTGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Aplysia parvula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138757",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Aplysia parvula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138757",
"accession": "DQ237959.1.1792_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia depilans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138754",
"accession": "AJ224918.1.1846_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia punctata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138758",
"accession": "AJ224919.1.1855_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02063790.929.2777_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02062549.10.1551_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
14.0
|
| id |
d289099f-8005-4510-b1c0-c4d97517a780
|
| scientificName |
Aplysia parvula
|
| AphiaID |
138757
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-32
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGGTGCAGGCGGGCGGTCCGGCTCGCGCCGGTTCCACTGCCCGTATCTCCTGCCCTACCGTCTGCCGGCTCTCTCCCGTGGGTGCTCTTCGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Aplysia parvula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138757",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Aplysia parvula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138757",
"accession": "DQ237959.1.1792_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia depilans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138754",
"accession": "AJ224918.1.1846_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia punctata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138758",
"accession": "AJ224919.1.1855_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02063790.929.2777_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02062549.10.1551_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|